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Funded Project Summary for Fiscal Year: 2013

FY	RFA/PA Number	Actv	IC	Grant Number	PI Name(Contact)	Institution	Project Title
2013	PAR09-218	R01	NS	1R01NS083761-01	DI BELLA, EDWARD VR	UNIVERSITY OF UTAH	Rapid high order diffusion imaging for stroke
2013	PAR09-218	R01	GM	2R01GM084453-10	DUNBRACK, ROLAND L	RESEARCH INST OF FOX CHASE CAN CTR	Bayesian Statistics and Algorithms for Homology Modeling
2013	PAR09-218	R01	DK	1R01DK098242-01	DUDLEY, JOEL THOMAS	MOUNT SINAI SCHOOL OF MEDICINE	Methods for Evolutionary Informed Network Analysis to Discover Disease Variation
2013	PAR09-218	R01	HL	1R01HL117063-01A1	GRIFFITH, BOYCE EUGENE	NEW YORK UNIVERSITY SCHOOL OF MEDICINE	Mathematical modeling and computer simulation of aortic dissection
2013	PAR09-218	R01	CA	1R01CA166119-01A1	HUGO, GEOFFREY D	VIRGINIA COMMONWEALTH UNIVERSITY	Consistent anatomy registration for lung cancer adaptive radiation therapy
2013	PAR09-218	R01	GM	1R01GM101430-01A1	SHAH, NIGAM	STANFORD UNIVERSITY	Mining health data for drug safety profiles
2013	PAR09-218	R01	CA	1R01CA160593-01A1	RAO, J SUNIL	UNIVERSITY OF MIAMI SCHOOL OF MEDICINE	Survival Bump Hunting for Finding Informative Subgroups in High Dimensional Data.
2013	PAR09-218	R01	EB	1R01EB017133-01	STUDHOLME, COLIN	UNIVERSITY OF WASHINGTON	Motion Robust Mapping of Human Brain Functional Connectivity Changes in Utero
2013	PAR09-218	R01	GM	1R01GM103773-01	WENG, ZHIPING	UNIV OF MASSACHUSETTS MED SCH WORCESTER	Development of a Computational Framework for TCR Engineering
2013	PAR09-218	R01	EB	1R01EB016777-01A1	XING, LEI	STANFORD UNIVERSITY	Computational Tools for Next Generation Volumetric Cone Beam Computed Tomography
2013	PAR09-218	R01	CA	1R01CA172211-01A1	XIAO, GUANGHUA	UT SOUTHWESTERN MEDICAL CENTER	Integrative Analysis to Identify Therapeutic Targets for Lung Cancer
2013	PAR09-218	R01	HG	1R01HG007354-01	WANG, TING	WASHINGTON UNIVERSITY	ADVANCED EPI/GENOME BROWSER WITH ENHANCED VISUALIZATION AND ANALYSIS TOOLS
2013	PAR09-219	R21	NS	1R21NS082212-01	GUAN, YUANFANG	UNIVERSITY OF MICHIGAN	Integrating context-specific networks to predict ataxia genes
2013	PAR09-219	R21	GM	1R21GM102366-01A1	HOCH, JEFFREY C	UNIVERSITY OF CONNECTICUT SCH OF MED/DNT	Random Phase Detection for Accelerating Biomolecular NMR Experiments
2013	PAR09-219	R21	GM	1R21GM106337-01	GILMORE, MICHAEL S	MASSACHUSETTS EYE AND EAR INFIRMARY	Modeling CRISPR to Preserve Antibiotics
2013	PAR09-219	R21	GM	1R21GM107683-01	CHUNG, MATTHIAS	VIRGINIA POLYTECHNIC INST AND ST UNIV	Identifying the dynamics of small and large microbial communities
2013	PAR09-219	R21	GM	1R21GM104517-01A1	HOCH, JEFFREY C	UNIVERSITY OF CONNECTICUT SCH OF MED/DNT	Maximum Entropy Deconvolution for Resolution & Sensitivity Enhancement in Bio-NMR
2013	PAR09-219	R21	GM	1R21GM107645-01	MANDL, KENNETH D	CHILDREN'S HOSPITAL CORPORATION	Epidemiology of Care Teams: Network Analysis of Providers and Shared Patients
2013	PAR09-219	R21	GM	1R21GM101719-01A1	MICHAILIDIS, GEORGE	UNIVERSITY OF MICHIGAN	Reconstructing Gene Regulatory Networks through Integration of Pertubation Screen
2013	PAR09-219	R21	HL	1R21HL118637-01	WANG, TAO	ALBERT EINSTEIN COLLEGE OF MEDICINE	Statistical Method for Identifying Genetic Modifiers of Conotruncal Heart De
2013	PAR09-219	R21	CA	1R21CA169387-01A1	YANKEELOV, THOMAS E	VANDERBILT UNIVERSITY MED CTR	Integrating Quantitative Imaging and Biophysical Models to Predict Tumor Growth
2013	PAR09-219	R21	GM	1R21GM100229-01A1	BAKER, MATTHEW LOWELL	BAYLOR COLLEGE OF MEDICINE	Atomic Resolution Cryo-EM using Model-Based Constraints
2013	PAR09-219	R21	GM	1R21GM100207-01A1	BUCKEE, CAROLINE O'FLAHERTY	HARVARD UNIVERSITY (SCH OF PUBLIC HLTH)	An alignment free network approach to analyzing highly recombinant malaria parasi
2013	PAR09-219	R21	GM	1R21GM106117-01	BRADLEY, PHILIP	FRED HUTCHINSON CAN RES CTR	Prediction and Design of Nucleic Acid Recognition by Repeat Proteins
2013	PAR09-219	R21	GM	1R21GM104500-01	BRADY, JOHN W	CORNELL UNIVERSITY	Computational/Experimental Modeling of Aqueous Environments in Biology
2013	PAR09-220	R44	OD	9R44OD018334-03A1	ENQUOBAHRIE, ANDINET ASMAMAW	KITWARE, INC.	Approach-specific, multi-GPU, multi-tool, high-realism neurosurgery simulation
2013	PAR09-220	R43	EB	1R43EB016979-01A1	GENG, JASON	XIGEN, LLC	Novel Full-Color High Frame Rate 3D Projector for Multiview 3D Displays
2013	PAR09-220	R44	GM	1R44GM108123-01	HARTMAN, JOHN RICHARD	ADVAITA CORPORATION	Pathway analysis tools for personalized medicine and drug repositioning
2013	PAR09-220	R43	TR	1R43TR000185-01A1	BUNIN, BARRY A	COLLABORATIVE DRUG DISCOVERY, INC.	Simplifying encoding of bioassays to accelerate translational drug discovery
2013	PAR09-221	R41	AR	1R41AR064596-01	ESSER, KARYN	CYTOINFORMATICS, LLC	Intelligent and Automatic Image Segmentation Software for High ThroughputAnalysi
2013	PAR09-221	R41	EB	1R41EB015775-01A1	CAHILL, NATHAN D.	KITWARE, INC.	Image-Based Quantification and Analysis of Longitudinal Lung Nodule Deformations
2013	PAR09-221	R42	HL	1R42HL117397-01A1	JUDD, ROBERT M	HEART IMAGING TECHNOLOGIES, LLC	Medical Images, HTML5, and Clinical Trial Remote Collaboration
2013	PAR09-221	R41	AG	1R41AG044022-01A1	KLIMOV, DMITRI KONSTANTINOVICH	PARABON COMPUTATION, INC.	Distributed REMD Simulation for Probing Alzheimer Molecular Mechanisms
2013	PAR09-221	R41	NS	1R41NS081792-01	AYLWARD, STEPHEN R	KITWARE, INC.	Multimodality image-based assessment system for traumatic brain injury
2013	PAR11-028	R01	GM	1R01GM107340-01	DELP, SCOTT L	STANFORD UNIVERSITY	Simtk.org: A Resource to Enable Collaboration & Reproducibility of Biosimulations
2013	PAR11-028	R01	GM	1R01GM103316-01A1	MUSEN, MARK A	STANFORD UNIVERSITY	Protege: An Ontology-Development Platform for Biomedical Scientists
2013	PAR11-028	R01	EB	1R01EB015314-01A1	LANCASTER, JACK L.	UNIV OF TX HSC, SA	Mango: literature-informed, 3-D visualization of human brain images
2013	PAR11-028	R01	EB	1R01EB014955-01A1	SCHROEDER, WILLIAM J	KITWARE, INC.	Accelerating Community-Driven Medical Innovation with VTK
2013	PAR11-028	R01	HL	1R01HL116931-01	SAN JOSE ESTEPAR, RAUL	BRIGHAM AND WOMEN'S HOSPITAL	Airway Inspector: a chest imaging biomarker software platform for COPD
2013	PAR11-028	R01	NS	1R01NS084957-01	MORI, SUSUMU	JOHNS HOPKINS UNIVERSITY	Continued Development and Maintenance of MriStudio
2013	PAR11-028	R01	EB	1R01EB016064-01A1	MAUDSLEY, ANDREW A.	UNIVERSITY OF MIAMI SCHOOL OF MEDICINE	Development and Maintenance of Software for MR Spectroscopic Imaging
2013	PAR11-028	R01	GM	1R01GM107104-01	SIMMERLING, CARLOS	STATE UNIVERSITY NEW YORK STONY BROOK	New solvent models, sampling methods and maintenance of Amber software
2013	PAR11-203	U01	EB	1U01EB015410-01A1	DHAHER, YASIN YOUSEF	REHABILITATION INSTITUTE OF CHICAGO	A Multi-Scale Modeling Construct of Knee Mechanics following ACL Reconstruction
2013	PAR11-203	U01	EB	1U01EB016027-01A1	ECKMANN, DAVID M	UNIVERSITY OF PENNSYLVANIA	Bridging multiple scales in modeling targeted drug nanocarrier delivery
2013	PAR11-203	U01	GM	1U01GM105627-01	GALVANI, ALISON P	YALE UNIVERSITY	Evaluating the social influences that impact vaccination decisions
2013	PAR11-203	U01	EB	5U01EB014976-02	KAPLAN, DAVID L	TUFTS UNIVERSITY MEDFORD	Models to predict protein biomaterial performance
2013	PAR11-203	U01	HL	1U01HL114476-01A1	KARNIADAKIS, GEORGE	BROWN UNIVERSITY	Multiscale Modeling of Sickle Cell Anemia: Methods and Validation
2013	PAR11-203	U01	HL	1U01HL116256-01A1	JARON, DOV	DREXEL UNIVERSITY	Multiscale, Transport-Dependent NO Signaling: Cells to Vascular Networks
2013	PAR11-203	U01	GM	5U01GM104604-02	LAZZI, GIANLUCA	UNIVERSITY OF UTAH	Predictive modeling of bioelectric activity on mammalian multilayered neuronal st
2013	PAR11-203	U01	HL	1U01HL116323-01	HUMPHREY, JAY D.	YALE UNIVERSITY	Multiscale, Multiphysics Model of Thrombus Biomechanics in Aortic Dissection
2013	PAR11-203	U01	HL	1U01HL114494-01A1	LIN, CHING-LONG	UNIVERSITY OF IOWA	An integrative statistics-guided image-based multi-scale lung model
2013	PAR11-203	U01	GM	1U01GM103804-01A1	NUZHDIN, SERGEY V.	UNIVERSITY OF SOUTHERN CALIFORNIA	Multi-scale modeling of genetic variation in a developmental network
2013	PAR11-203	U01	GM	5U01GM102098-02	SAUNDERS, MICHAEL ALAN	STANFORD UNIVERSITY	Multiscale Molecular Systems Biology: Reconstruction and Model Optimization
2013	PAR11-203	U02	EB	1U01EB016422-01A1	THOMOPOULOS, STAVROS	WASHINGTON UNIVERSITY	Cross-scale interactions between mineral and collagen for tendon-bone attachment
2013	PAR11-203	U01	CA	1U01CA177799-01	ZAMAN, MUHAMMAD HAMID	BOSTON UNIVERSITY (CHARLES RIVER CAMPUS)	Modeling bi-directional signaling and cytoskeletal dynamics in 3D cell migrations
2013	PAR11-203	U01	CA	1U01CA174706-01	YANKEELOV, THOMAS E	VANDERBILT UNIVERSITY MED CTR	Image Driven Multi-Scale Modeling to Predict Treatment Response in Breast Cancer
2013	PAR11-203	U01	EB	1U01EB016638-01	BAROCAS, VICTOR H	UNIVERSITY OF MINNESOTA	Multiscale Modeling of Facet Capsule Mechanobiology
2013	PAR11-203	U01	HL	1U01HL119178-01	BERCELI, SCOTT A	UNIVERSITY OF FLORIDA	Constitutive and Agent-Based Multiscale Models to Improve Vein Graft Survival
2013	PAR11-203	U01	HL	1U01HL118738-01A1	BEARD, DANIEL A	MEDICAL COLLEGE OF WISCONSIN	Coronary Blood Flow: Integrated Theory and Experiment
2013	PAR11-208	R01	LM	5R01LM011366-02	CARRELL, DAVID S.	GROUP HEALTH COOPERATIVE	Scalable and Robust Clinical Text De-Identification Tools
2013	PAR11-208	R01	LM	5R01LM011364-02	CHEN, ELIZABETH S	UNIVERSITY OF VERMONT & ST AGRIC COLLEGE	Leveraging the EHR to Collect and Analyze Social, Behavioral & Familial Factors
2013	PAR11-208	R01	LM	1R01LM011416-01	DEL FIOL, GUILHERME	UNIVERSITY OF UTAH	Meeting Clinicians Information Needs with Highly Tailored Knowledge Summaries
2013	PAR11-208	R01	LM	1R01LM011563-01A1	COHEN, TREVOR	UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON	Using Biomedical Knowledge to Identify Plausible Signals for Pharmacovigilance
2013	PAR11-208	R01	LM	1R01LM011297-01A1	DAVULURI, RAMANA V	WISTAR INSTITUTE	Informatics platform for mammalian gene regulation at isoform-level
2013	PAR11-208	R01	LM	5R01LM011247-02	KOYUTURK, MEHMET	CASE WESTERN RESERVE UNIVERSITY	Enhancing Genome-Wide Association Studies via Integrative Network Analysis
2013	PAR11-208	R01	LM	1R01LM011647-01	MIKLER, ARMIN ROBERT	UNIVERSITY OF NORTH TEXAS	Minimizing Access Disparities in Bio Emergency Response Planning
2013	PAR11-208	R01	LM	5R01LM011360-02	SHEN, LI	INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS	Bioinformatics Strategies for Multidimensional Brain Imaging Genetics
2013	PAR11-208	R01	LM	5R01LM011179-02	STATNIKOV, ALEXANDER	NEW YORK UNIVERSITY SCHOOL OF MEDICINE	Methods for Accurate and Efficient Discovery of Local Pathways
2013	PAR11-208	R01	LM	1R01LM011566-01	TONELLATO, PETER J.	HARVARD UNIVERSITY (MEDICAL SCHOOL)	Predictive optimal anticlotting treatment for segmented patient populations
2013	PAR11-208	R01	LM	5R01LM011180-02	ABERNETHY, NEIL FRANKLIN	UNIVERSITY OF WASHINGTON	Improving Network Analysis and Visualization for Infectious Disease Control
2013	PAR12-001	R01	GM	1R01GM104139-01	ERDEMIR, AHMET	CLEVELAND CLINIC LERNER COM-CWRU	Open Knee(s): Virtual Biomechanical Representations of the Knee Joint
2013	PAR12-001	R01	DE	1R01DE024450-01A1	CEVIDANES, LUCIA H	UNIVERSITY OF MICHIGAN	Quantification of 3D Bony Changes in Temporomandibular Joint Osteoarthritis
2013	PAR12-001	R01	GM	1R01GM104303-01	MANDL, KENNETH D	CHILDREN'S HOSPITAL CORPORATION	Instrumenting i2b2 for Improved Medication Research: Adding the Patient Voice
2013	PAR12-001	R01	HG	1R01HG007078-01	WANG, XIAOFENG	INDIANA UNIVERSITY BLOOMINGTON	Privacy preserving technologies for human genome data analysis and dissemination
2013	PAR12-001	R01	EB	1R01EB016701-01A1	ANDERSON, ANDREW EDWARD	UNIVERSITY OF UTAH	Population-Based Shape and Biomechanical Analysis of Hip Pathoanatomy
2013	R11-208	R56	LM	5R56LM009500-05	GUO, NANCY LAN	WEST VIRGINIA UNIVERSITY	A Novel Computational Framework for individualized clinical decision-making

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Funded Project Summary for Fiscal Year: 2013

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