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Funded Project Summary for Fiscal Year:
2012
FY
RFA/PA Number
Actv
IC
Grant Number
PI Name(Contact)
Institution
Project Title
2012
PAR09-218
R01
GM
1R01GM099827-01A1
BYSTROFF, CHRISTOPHER
RENSSELAER POLYTECHNIC INSTITUTE
Computational design of specific binding proteins using Leave-One-Out
2012
PAR09-218
R01
AI
1R01AI097403-01
COWELL, LINDSAY G
UNIVERSITY OF TEXAS SW MED CTR/DALLAS
RepServer: Antigen Receptor Repertoire Analysis Pipelines via the WWW
2012
PAR09-218
R01
GM
1R01GM097117-01A1
HIGGINS, PETER D.R.
UNIVERSITY OF MICHIGAN AT ANN ARBOR
Application of Machine Learning Algorithms to Thiopurine Monitoring in IBD
2012
PAR09-218
R01
HG
1R01HG006282-01A1
JI, HONGKAI
JOHNS HOPKINS UNIVERSITY
Computational Tools for Mining Large Amounts of ChIP and Gene Expression Data
2012
PAR09-218
R01
GM
1R01GM102365-01
ALTMAN, RUSS BIAGIO
STANFORD UNIVERSITY
Combining systems biology and structural biology to find new therapeutics
2012
PAR09-218
R01
GM
1R01GM100953-01
DAS, RHIJU
STANFORD UNIVERSITY
Internet-scale discovery of RNA bioengineering rules
2012
PAR09-218
R01
GM
1R01GM098316-01A1
MA'AYAN, AVI
MOUNT SINAI SCHOOL OF MEDICINE
Expression2Kinases: mRNA Profiling Linked to Multiple Upstream Regulatory Layers
2012
PAR09-218
R01
HG
1R01HG006841-01
JI, HONGKAI
JOHNS HOPKINS UNIVERSITY
Statistical and Computational Tools for Next-generation ChIP-seq Applications
2012
PAR09-218
R01
GM
1R01AG041721-01A1
SHEN, DINGGANG
UNIVERSITY OF NORTH CAROLINA CHAPEL HILL
Quantifying Brain Abnormality by Multimodality Neuroimage Analysis
2012
PAR09-218
R01
HG
1R01HG006272-01A1
PRINS, JAN F
UNIVERSITY OF NORTH CAROLINA CHAPEL HILL
Unlocking Transcript Diversity via Differential Analyses of Splice Graphs
2012
PAR09-218
R01
GM
1R01GM100039-01
PICO, ALEXANDER R
J. DAVID GLADSTONE INSTITUTES
WikiPathways Project: At the Intersection of Big Data and Researcher Knowledge
2012
PAR09-218
R01
EB
1R01EB015497-01
SHELBURNE, KEVIN B
UNIVERSITY OF DENVER (COLORADO SEMINARY)
A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Curren
2012
PAR09-218
R01
GM
1R01GM101151-01
WAGNER, MICHAEL MATTHEW
UNIVERSITY OF PITTSBURGH AT PITTSBURGH
Apollo: Increasing Access and Use of Epidemic Models Through the Development and
2012
PAR09-218
R01
GM
1R01GM100364-01
ZHANG, WEIXIONG
WASHINGTON UNIVERSITY
A Novel Co-Expression Network Approach that is Robust to Genetic Heterogeneity An
2012
PAR09-218
R01
EB
1R01EB013248-01A1
WARFIELD, SIMON K
CHILDREN'S HOSPITAL BOSTON
Improved Quantitative Assessment of the Fetal Brain from 3D Volumetric MRI
2012
PAR09-218
R01
HG
1R01HG006870-01
XIE, XIAOHUI
UNIVERSITY OF CALIFORNIA IRVINE
Machine Learning Methods to Increase Genomic Accessibility by Next-gen Sequencing
2012
PAR09-218
R01
EB
1R01EB015133-01A1
WEISS, JEFFREY A.
UNIVERSITY OF UTAH
Computational Framework for Multiscale Mechanics of Connective Tissues
2012
PAR09-218
R01
GM
1R01GM102515-01
ZHANG, SHAOJIE
UNIVERSITY OF CENTRAL FLORIDA
Identification, Discovery, and Public Archiving of RNA Structural Motifs
2012
PAR09-218
R01
CA
1R01CA166816-01
YOSHIDA, HIROYUKI
MASSACHUSETTS GENERAL HOSPITAL
Cloud-computer-aided Diagnostic Imaging Decision Support System
2012
PAR09-218
R01
GM
1R01HG006264-01A1
XIAO, XINSHU GRACE
UNIVERSITY OF CALIFORNIA LOS ANGELES
Functional Genetic Variations in Splicing Regulation
2012
PAR09-219
R21
GM
1R21GM102642-01
BARDHAN, JAYDEEP PORTER
NORTHEASTERN UNIVERSITY
Understanding pH-Dependent Protein Behavior Using Advanced Continuum Theory
2012
PAR09-219
R21
GM
1R21GM102716-01
DAS, RHIJU
STANFORD UNIVERSITY
Correcting Pervasive Errors in RNA Crystallography with Rosetta
2012
PAR09-219
R21
GM
1R21GM098896-01
FAY, JUSTIN C
WASHINGTON UNIVERSITY
Detecting Adaptive Evolution in the Context of Linked Deleterious Mutations
2012
PAR09-219
R21
CA
1R21GM096156-01A1
DOLAN, MARY E
JACKSON LABORATORY
OncoCL: A Cancer Cell Ontology
2012
PAR09-219
R21
GM
1R21GM100224-01
GRABE, MICHAEL
UNIVERSITY OF PITTSBURGH AT PITTSBURGH
Computer Simulations of Lysosomal and Osteoclast Microphysiology
2012
PAR09-219
R21
GM
1R21GM100122-01
GARDNER, MELISSA KLEIN
UNIVERSITY OF MINNESOTA TWIN CITIES
Computational Modeling and Analysis of Kinetochore Dynamics during Mitosis
2012
PAR09-219
R21
GM
1R21GM096156-01A1
GREALLY, JOHN
ALBERT EINSTEIN COL OF MED YESHIVA UNIV
Mapping and Functional Analysis of RNA:DNA Hybrid-Forming Loci
2012
PAR09-219
R21
NS
1R21NS076827-01A1
ARFANAKIS, KONSTANTINOS
ILLINOIS INSTITUTE OF TECHNOLOGY
Probabilistic White and Gray Matter Atlas of the Adult Human Brain
2012
PAR09-219
R21
HG
1R21HG006464-01
MA, JIAN
UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN
Improve Genome Annotation Using Multiple Sequence Alignment Reliability Scores
2012
PAR09-219
R21
GM
1R21GM100303-01
GERLOFF, DIETLIND L
UNIVERSITY OF CALIFORNIA SANTA CRUZ
In Silico and in Vitro Investigation of Non-Conserved Interaction Characteristics
2012
PAR09-219
R21
HG
1R21HG006913-01
KINGSFORD, CARLETON LEE
UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS
Fast k-mer Counting to Quantify Gene Expression and Improve Genome Assembly
2012
PAR09-219
R21
GM
1R21CA164322-01
SILVA, ARIOSTO S
H. LEE MOFFITT CANCER CTR & RES INST
A Translational Model of Evolution of Myeloma Adhesion-Mediated Drug Resistance
2012
PAR09-219
R21
GM
1R21GM101134-01
MAKHATADZE, GEORGE I
RENSSELAER POLYTECHNIC INSTITUTE
Computational and Experimental Studies of the Amyloid Fibril Formation by PAPf39
2012
PAR09-219
R21
GM
1R21GM094649-01A1
SINGH, AMBUJ K
UNIVERSITY OF CALIFORNIA SANTA BARBARA
Integrative Modeling of Regulatory Processes Using High-Throughput Genetic Data
2012
PAR09-219
R21
GM
1R21GM102226-01
SCHWARTZ, STEVEN D
ALBERT EINSTEIN COL OF MED YESHIVA UNIV
Quantum Nuclear Dynamics and Enzyme Chemistry
2012
PAR09-219
R21
GM
1R21GM101552-01
ZHANG, JINFENG
FLORIDA STATE UNIVERSITY
Elastic Shape Analysis for Protein Structure Alignment-New Advancement in an Old
2012
PAR09-220
R43
GM
1R43GM100520-01
DARNELL, STEVEN JOSEPH
DNASTAR, INC.
Structural bioinformatics software for epitope selection and antibody engineering
2012
PAR09-220
R43
AA
1R43AA021945-01A1
FEIN, GEORGE
NEUROBEHAVIORAL RESEARCH, INC.
Automated Delineation, Parcellation and Analysis of the Cerebellum from MR Images
2012
PAR09-220
R43
GM
1R43GM101729-01A1
FRALEY, CHRIS
INSILICOS
Parsimonious Models for Survival Data
2012
PAR09-220
R43
EB
1R43EB014598-01
GENG, JASON
XIGEN, LLC
3D Single Fiber Endoscope for Minimally Invasive Surgeries
2012
PAR09-220
R44
GM
1R44GM097851-01A1
KABUKA, MANSUR R.
INFOTECH SOFT, INC.
Ontology-Based Knowledge and Belief Management System
2012
PAR09-220
R43
GM
1R43GM103689-01
RINEHART, DUANE
METABOSCIENTIA, LLC
XCMS-Online: An Integrated Platform for Metabolic Profile Analysis and Metabolite
2012
PAR11-028
R01
GM
1R01GM099678-01
CARRAGHER, BRIDGET OLIVIA
SCRIPPS RESEARCH INSTITUTE
Continued Development and Maintenance of Appion Software
2012
PAR11-028
R01
GM
1R01GM101219-01
DE LOS CAMPOS, GUSTAVO A
UNIVERSITY OF ALABAMA AT BIRMINGHAM
Statistical Tools for Whole-Genome Prediction of Complex Traits and Diseases
2012
PAR11-028
R01
GM
1R01GM100058-01
FOLEY, B. LACHELE
UNIVERSITY OF GEORGIA
Continued Development and Maintenance of GLYCAM-Web
2012
PAR11-028
R01
GM
1R01GM096872-01A1
HEY, EMANUEL
RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK
Maintenance and Development of the IMa Program
2012
PAR11-028
R01
GM
1R01GM101935-01
IZAGUIRRE, JESUS ANTONIO
UNIVERSITY OF NOTRE DAME
Enabling Long Timestep Molecular Dynamics on Parallel CPU and GPU Environments
2012
PAR11-028
R01
GM
1R01GM099738-01
BAHAR, IVET
UNIVERSITY OF PITTSBURGH AT PITTSBURGH
Continued Development of Protein Dynamics Software ProDy
2012
PAR11-028
R01
GM
2R01GM075742-09A1
KARP, PETER D
SRI INTERNATIONAL
Development and Support of the Pathway Tools Software [SRI Proposal ECU 11-614]
2012
PAR11-028
R01
EB
1R01EB014877-01
PETZOLD, LINDA R.
UNIVERSITY OF CALIFORNIA SANTA BARBARA
Stochastic Simulation Service: A Cloud Computing Framework for Modeling and Simul
2012
PAR11-028
R01
CA
1R01CA157304-01A1
MESIROV, JILL P
BROAD INSTITUTE, INC.
A Next-generation Integrative Genomics Viewer for Biomedical and Cancer Research
2012
PAR11-028
R01
GM
1R01GM102520-01
SAUTER, NICHOLAS K
UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB
Towards Real-time XFEL Data Reduction with CCTBX
2012
PAR11-028
R01
HG
1R01HG006693-01
QUINLAN, AARON R
UNIVERSITY OF VIRGINIA CHARLOTTESVILLE
New Algorithms and Tools for Large-scale Genomic Analyses
2012
PAR11-028
R01
GM
1R01GM096967-01A1
TROPSHA, ALEXANDER
UNIVERSITY OF NORTH CAROLINA CHAPEL HILL
Chembench: the Integrated Web Portal to Accelerate Cheminformatics and Chemical G
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