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    • Funded Project Summary for Fiscal Year: 2009


    Project TitleProject Information
    Software Maintenance for Biomolecular Complexes Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01EB004873-03
    Actv: R01
    IC: EB
    PI Name(Contact): BAJAJ, CHANDRAJIT L
    Institution: UNIVERSITY OF TEXAS AUSTIN
    Continued Development for The Image-guided Surgical Toolkit Project (IGSTK) Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01EB007195-03
    Actv: R01
    IC: EB
    PI Name(Contact): CLEARY, KEVIN ROBERT
    Institution: GEORGETOWN UNIVERSITY
    GenMAPP-CS, a dynamic resource pathway analysis Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM080223-06
    Actv: R01
    IC: GM
    PI Name(Contact): CONKLIN, BRUCE R
    Institution: J. DAVID GLADSTONE INSTITUTES
    Visant-Predictome: A System for Integration, Mining Visualization and Analysis Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01RR022971-03
    Actv: R01
    IC: RR
    PI Name(Contact): DELISI, CHARLES
    Institution: BOSTON UNIVERSITY
    UltraScan Software Maintenance and Development Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01RR022200-03
    Actv: R01
    IC: RR
    PI Name(Contact): DEMELER, BORRIES
    Institution: UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT
    Continued Development and Maintenance of the Neuroimaging in Python Project Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01MH081909-03
    Actv: R01
    IC: MH
    PI Name(Contact): D'ESPOSITO, MARK
    Institution: UNIVERSITY OF CALIFORNIA BERKELEY
    Comparative genomics with the VISTA/LAGAN computational system Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM081080-03
    Actv: R01
    IC: GM
    PI Name(Contact): DUBCHAK, INNA
    Institution: UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB
    Softward to facilitate adoption of the Sequence Ontology for genome management Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01HG004341-03
    Actv: R01
    IC: HG
    PI Name(Contact): EILBECK, KAREN LOUISE
    Institution: UNIVERSITY OF UTAH
    Maintenance and Expansion of the TIGR Annotation Engine Service Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM080227-04
    Actv: R01
    IC: GM
    PI Name(Contact): GIGLIO, MICHELLE GWINN
    Institution: UNIVERSITY OF MARYLAND BALTIMORE.
    Development and Improvement of Tissue Simulation Toolkit Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM077138-03
    Actv: R01
    IC: GM
    PI Name(Contact): GLAZIER, JAMES ALEXANDER
    Institution: INDIANA UNIVERSITY BLOOMINGTON
    Enhancement of the GBrowse Genome Annotation Browser Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01HG004483-03
    Actv: R01
    IC: HG
    PI Name(Contact): HOLMES, IAN H
    Institution: UNIVERSITY OF CALIFORNIA BERKELEY
    Software for the Statistical Analysis of Microarray Probe Level Data Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01RR021967-03
    Actv: R01
    IC: RR
    PI Name(Contact): IRIZARRY, RAFAEL ANGEL
    Institution: JOHNS HOPKINS UNIVERSITY
    Re-engineering the MEGA software package Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM081066-03
    Actv: R01
    IC: GM
    PI Name(Contact): KUMAR, SUDHIR
    Institution: ARIZONA STATE UNIVERSITY-TEMPE CAMPUS
    University of Washington Emission Tomography Simulation Resource Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01CA126593-03
    Actv: R01
    IC: CA
    PI Name(Contact): LEWELLEN, THOMAS K.
    Institution: UNIVERSITY OF WASHINGTON
    BRAINS Morphology and Image Analysis Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01NS050568-03
    Actv: R01
    IC: NS
    PI Name(Contact): MAGNOTTA, VINCENT A
    Institution: UNIVERSITY OF IOWA
    Community Development of the Cell Centered Database Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM082949-03
    Actv: R01
    IC: GM
    PI Name(Contact): MARTONE, MARYANN E
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    The Rutgers Mapping Resources Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM080221-03
    Actv: R01
    IC: GM
    PI Name(Contact): MATISE, TARA C.
    Institution: RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK
    COPASI: Biochemical Network Modeling and Simulation Software Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM080219-03
    Actv: R01
    IC: GM
    PI Name(Contact): MENDES, PEDR
    Institution: VIRGINIA POLYTECHNIC INST AND ST UNIV
    Software tools for analysis and visulaization of protein structure Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM080232-03
    Actv: R01
    IC: GM
    PI Name(Contact): MERRITT, ETHAN A
    Institution: UNIVERSITY OF WASHINGTON
    Continued Development and Maintenance of the Systems Biology Workbench Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM081070-03
    Actv: R01
    IC: GM
    PI Name(Contact): SAURO, HERBERT M.
    Institution: UNIVERSITY OF WASHINGTON
    LABELIT: Automated Diffraction Analysis for X-ray Crystallography Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM077071-03
    Actv: R01
    IC: GM
    PI Name(Contact): SAUTER, NICHOLAS K
    Institution: UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB
    Further development of the FEAST software, and its use for novel gene predictions Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM081083-03
    Actv: R01
    IC: GM
    PI Name(Contact): SMIT, ARIAN FREDERICUS ANTHONIUS
    Institution: INSTITUTE FOR SYSTEMS BIOLOGY
    An Open and Scalable Stochastic Simulation Library for Biology Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01EB007511-03
    Actv: R01
    IC: EB
    PI Name(Contact): STALZER, MARK ANTHONY
    Institution: CALIFORNIA INSTITUTE OF TECHNOLOGY
    New Methods and Enhanced Software for Predicting Functional SNPs Fiscal Year: 2009
    RFA/PA Number: PAR05-057
    Grant Number: 5R01GM078598-03
    Actv: R01
    IC: GM
    PI Name(Contact): SUNYAEV, SHAMIL
    Institution: BRIGHAM AND WOMEN'S HOSPITAL
    Phylogenetic Binning of Metagenomic Sequence Data Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21HG005107-01
    Actv: R21
    IC: HG
    PI Name(Contact): ALLEN, ERIC ELLSWORTH
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    Computational design of specific binding proteins using Leave-One-Out Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM088838-01
    Actv: R21
    IC: GM
    PI Name(Contact): BYSTROFF, CHRISTOPHER
    Institution: RENSSELAER POLYTECHNIC INSTITUTE
    Quantitative, Model-based Medical Decision support by Bayesian Inference Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21LM009936-01A1
    Actv: R21
    IC: LM
    PI Name(Contact): CLERMONT, GILLES
    Institution: UNIVERSITY OF PITTSBURGH AT PITTSBURGH
    Anchor: A PDB-Wide And Web-Based Discovery Resource Of Small Molecular Weight Pro Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM087617-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): DOEMLING, ALEXANDER SIEGFRIED
    Institution: UNIVERSITY OF PITTSBURGH AT PITTSBURGH
    Use of cell phones for field data capture in a Dengue Decision Support System Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21AI080567-01A1
    Actv: R21
    IC: AI
    PI Name(Contact): EISEN, LARS
    Institution: COLORADO STATE UNIVERSITY-FORT COLLINS
    A Fluid-Structure Interaction Method for Patient-Specific Cardiovascular Modeling Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21EB008804-01A2
    Actv: R21
    IC: EB
    PI Name(Contact): FINOL, ENDER A
    Institution: CARNEGIE-MELLON UNIVERSITY
    Agent-Based Modeling to Reveal Mechanisms of Idiopathic Interstitial Lung Disease Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21HL093675-01
    Actv: R21
    IC: HL
    PI Name(Contact): FOLCIK NIVAR, VIRGINIA ANN
    Institution: OHIO STATE UNIVERSITY
    NeuroIE: a Tool for Mining the Neuroanatomic Volumetric Literature Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21NS064354-01A1
    Actv: R21
    IC: NS
    PI Name(Contact): GAO, YONG
    Institution: MASSACHUSETTS GENERAL HOSPITAL
    Nonparametric Analysis of Reverse-Phase Protein Lysate Array Data Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21CA129671-01A1
    Actv: R21
    IC: CA
    PI Name(Contact): HU, JIANHUA
    Institution: UNIVERSITY OF TEXAS MD ANDERSON CAN CTR
    Dendritic Cell Heterogeneity in Toll-like receptor 4 Signaling: Concept Validatio Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R56AI076221-01A1
    Actv: R56
    IC: AI
    PI Name(Contact): KLINKE, DAVID JOHN
    Institution: WEST VIRGINIA UNIVERSITY
    Exploiting the User Interface for Data Integration in Effectiveness Research Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21LM009550-01A1
    Actv: R21
    IC: LM
    PI Name(Contact): LOGAN, JUDITH R
    Institution: OREGON HEALTH AND SCIENCE UNIVERSITY
    Prediction of Protein Crystallization and Diffraction Quality Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM088518-01
    Actv: R21
    IC: GM
    PI Name(Contact): MERRITT, ETHAN A
    Institution: UNIVERSITY OF WASHINGTON
    Developmental Dynamics of Enamel Formation Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21DE018878-01A1
    Actv: R21
    IC: DE
    PI Name(Contact): PAPAGERAKIS, PETROS
    Institution: UNIVERSITY OF MICHIGAN AT ANN ARBOR
    PEG Hydrogel Enabling Technologies for Guiding Endothelial Cell Function Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21HL094916-01A1
    Actv: R21
    IC: HL
    PI Name(Contact): PAPAVASILIOU, GEORGIA
    Institution: ILLINOIS INSTITUTE OF TECHNOLOGY
    Deformation-Based Computational Morphometry for Cell Biology Applications Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM088816-01
    Actv: R21
    IC: GM
    PI Name(Contact): ROHDE, GUSTAVO KUNDE
    Institution: SCARNEGIE-MELLON UNIVERSITY
    Contact Network Epidemiology of Influenza and Other Nosocomial Infections Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21AI081164-01A1
    Actv: R21
    IC: AI
    PI Name(Contact): SEGRE, ALBERTO MARIA
    Institution: UNIVERSITY OF IOWA
    A Turnkey Solution for Next Generation Sequence Data Analysis Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21HG005133-01
    Actv: R21
    IC: HG
    PI Name(Contact): TAYLOR, JAMES PETER
    Institution: EMORY UNIVERSITY
    A Novel Computational Package for DNA Enzyme Design Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM083950-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): TIAN, JINGDONG
    Institution: DUKE UNIVERSITY
    Machine learning to identify predictive SNPs and complex interaction effects Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM085665-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): WANG, YUE
    Institution: VIRGINIA POLYTECHNIC INST AND ST UNIV
    10-Theory and Experiment for Genome Packaging in HBV Nucleocapsids Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21AI077532-01A1
    Actv: R21
    IC: AI
    PI Name(Contact): WU, JIANZHONG
    Institution: UNIVERSITY OF CALIFORNIA RIVERSIDE
    Determining the conformational stability of NMR ensemble structures Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM083827-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): YTREBERG, FREDERICK MARTIN
    Institution: UNIVERSITY OF IDAHO
    Longitudinal Analysis of Biomedical Imaging Data Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21AG033387-01A1
    Actv: R21
    IC: AG
    PI Name(Contact): ZHU, HONGTU
    Institution: UNIVERSITY OF NORTH CAROLINA CHAPEL HILL
    A new scoring framework for selecting structural models Fiscal Year: 2009
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM088517-01
    Actv: R21
    IC: GM
    PI Name(Contact): ZOU, XIAOQIN
    Institution: UNIVERSITY OF MISSOURI-COLUMBIA
    An integrated systems pharmacology platform for pharmacogenomic research Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43GM087839-01
    Actv: R43
    IC: HL
    PI Name(Contact): BRENNAN, RICHARD JOHN
    Institution: GENEGO, INC.
    Integrated Desktop Software for Management of Hepatitic C Data Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43AI084307-01
    Actv: R43
    IC: AI
    PI Name(Contact): CRAIG, JOHANNA C
    Institution: GATACA, LLC
    Novel Static Screen Volumetric 3D Display for Medical Image Visualization Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43RR028017-01A2
    Actv: R43
    IC: RR
    PI Name(Contact): GENG, JASON
    Institution: XIGEN, LLC
    Developing Contractual Service Framework for Bone Histomorphometry Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43AR057272-01
    Actv: R43
    IC: AR
    PI Name(Contact): HONG, SEUNG-HYUN
    Institution: CYBERCONNECT EZ, LLC
    C-ME/MOSS 2007 - Tools for Contextual Scientific Collaboration and Training Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43RR025727-01
    Actv: R43
    IC: RR
    PI Name(Contact): NELSON, DAVID M K
    Institution: KCI LIFE SCIENCES
    FiberQuant: A Tool for Rapid Quantitative Analysis of White Matter Fiber Tracts Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43NS066548-01
    Actv: R43
    IC: NS
    PI Name(Contact): SMITH, MICHAEL E
    Institution: CORTECHS LABS, INC.
    Software Systems for Detecting Rare Muations Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43HG005297-01
    Actv: R43
    IC: HG
    PI Name(Contact): SMITH, TODD M
    Institution: GEOSPIZA, INC..
    Flexible information visualization and analysis platform for biomedical research Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43LM010245-01
    Actv: R43
    IC: LM
    PI Name(Contact): TURNER, WES
    Institution: KITWARE, INC.
    Computational framework for analysis of microarray gene expression data Fiscal Year: 2009
    RFA/PA Number: PAR07-160
    Grant Number: 1R43GM083346-01A1
    Actv: R43
    IC: GM
    PI Name(Contact): WROBLEWSKI, DARIUSZ
    Institution: BIOFORMATIX, INC.
    A Novel Method for Signaling Pathway Analysis Fiscal Year: 2009
    RFA/PA Number: PAR07-161
    Grant Number: 1R41GM087013-01
    Actv: R41
    IC: GM
    PI Name(Contact): DRAGHICI, SORIN
    Institution: ADVAITA CORPORATION
    Numerical Tools for analyzing cell signalling circuits in normal and tumor cells Fiscal Year: 2009
    RFA/PA Number: PAR07-161
    Grant Number: 1R41EB008414-01A1
    Actv: R41
    IC: EB
    PI Name(Contact): JASPER, PAUL J.
    Institution: NUMERICA TECHNOLOGY, INC.
    A New Web 2.0 Platform for Analyzing Genomics Data with Application to the Study Fiscal Year: 2009
    RFA/PA Number: PAR07-161
    Grant Number: 1R41CA139639-01A1
    Actv: R41
    IC: CA
    PI Name(Contact): MYATT, GLENN JOHN
    Institution: MYATT AND JOHNSON, INC.
    Electronic Image Trial Management System Fiscal Year: 2009
    RFA/PA Number: PAR07-161
    Grant Number: 1R41CA132790-01A1
    Actv: R41
    IC: CA
    PI Name(Contact): RHODES, COLIN EDWARD
    Institution: VIRTUALSCOPICS, INC.
    BiologicalNetworks: Integrated Environment for Systems Biology Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01GM084881-02
    Actv: R01
    IC: GM
    PI Name(Contact): BAITALUK, MICHAEL
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    CHARMM Modernization, Performance and Continued Development Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01RR023920-02
    Actv: R01
    IC: RR
    PI Name(Contact): BROOKS, CHARLES L
    Institution: UNIVERSITY OF MICHIGAN AT ANN ARBOR
    BioScholar: a Biomedical Knowledge Engineering framework based on the published l Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01GM083871-02
    Actv: R01
    IC: GM
    PI Name(Contact): BURNS, GULLY APC
    Institution: UNIVERSITY OF SOUTHERN CALIFORNIA
    dChip:Analysis and Visualization of Oligonucleotide Expression and SNP Arrays Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01GM077122-02
    Actv: R01
    IC: GM
    PI Name(Contact): LI, CHENG
    Institution: DANA-FARBER CANCER INSTITUTE
    CD-HIT: A Fast Program to Cluster and Compare Large Sets of Biological Sequences Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01RR025030-02
    Actv: R01
    IC: RR
    PI Name(Contact): LI, WEIZHONG
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    Genome-wide prediction and analysis of coding variants Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01HG004701-02
    Actv: R01
    IC: HG
    PI Name(Contact): MURPHY, SEAN
    Institution: J. CRAIG VENTER INSTITUTE, INC.
    Re-engineering the CRC Integrated Information Management System Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01CA134232-02
    Actv: R01
    IC: CA
    PI Name(Contact): PAYNE, PHILIP RICHARD ORRIN
    Institution: OHIO STATE UNIVERSITY
    Continued development of WHONET for surveillance of infections & drug resistance Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01RR025040-02
    Actv: R01
    IC: RR
    PI Name(Contact): STELLING, JOHN
    Institution: BRIGHAM AND WOMEN'S HOSPITAL
    Development and Maintenance of PANTHER Software Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01GM081084-02
    Actv: R01
    IC: GM
    PI Name(Contact): THOMAS, PAUL D.
    Institution: SRI INTERNATIONAL
    Open Source Microscopy Software Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 5R01EB007187-02
    Actv: R01
    IC: EB
    PI Name(Contact): VALE, RONALD D
    Institution: UNIVERSITY OF CALIFORNIA SAN FRANCISCO
    Visual Analytics Software Environment for Proteomics Data Integration Fiscal Year: 2009
    RFA/PA Number: PAR07-235
    Grant Number: 1R01GM084892-01
    Actv: R01
    IC: GM
    PI Name(Contact): WEBB-ROBERTSON, BOBBIE-JO MARY
    Institution: BATTELLE PACIFIC NORTHWEST LABORATORIES
    Structural Dynamics of Biomolecular Systems Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01GM086238-01
    Actv: R01
    IC: GM
    PI Name(Contact): BAHAR, IVET
    Institution: UNIVERSITY OF PITTSBURGH AT PITTSBURGH
    The ODIE Toolkit - Software for Information Extraction and Biomedical Ontology De Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01CA127979-03
    Actv: R01
    IC: CA
    PI Name(Contact): CROWLEY, REBECCA S
    Institution: UNIVERSITY OF PITTSBURGH AT PITTSBURGH
    Comparative Genomics of Non-Coding Regions to Facilitate Translational Research Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01HL091495-01A1
    Actv: R01
    IC: HL
    PI Name(Contact): DUBCHAK, INNA
    Institution: UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB
    Simulation of Coronary Artery Bypass Graft and Surgical Ventricular Restoration Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01HL086400-01A1
    Actv: R01
    IC: HL
    PI Name(Contact): GUCCIONE, JULIUS MATTEO
    Institution: NORTHERN CALIFORNIA INSTITUTE RES & EDUC
    Muscle Morphology, Strength and Compensatory Strategies Following Stroke Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01NS055383-02
    Actv: R01
    IC: NS
    PI Name(Contact): HIGGINSON, JILL S
    Institution: UNIVERSITY OF DELAWARE
    Biomechanical Simulation of Evolving Aortic Aneurysms for Designing Intervention Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01HL086418-02
    Actv: R01
    IC: HL
    PI Name(Contact): HUMPHREY, JAY D
    Institution: TEXAS ENGINEERING EXPERIMENT STATION
    Ontologies and Biomedical Language Processing Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01GM083649-03
    Actv: R01
    IC: GM
    PI Name(Contact): HUNTER, LAWRENCE E
    Institution: UNIVERSITY OF COLORADO DENVER
    The Microstructural Basis of Abnormal Connectivity in Autism Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01MH084795-01
    Actv: R01
    IC: MH
    PI Name(Contact): LAINHART, JANET ELIZABETH
    Institution: UNIVERSITY OF UTAH
    3D Shape Analysis for Computational Anatomy Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01EB008171-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): MILLER, MICHAEL I
    Institution: JOHNS HOPKINS UNIVERSITY
    The Cognitive Atlas: Developing an Interdisciplinary Knowledge Base Through Socia Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01MH082795-02
    Actv: R01
    IC: MH
    PI Name(Contact): POLDRACK, RUSSELL A
    Institution: UNIVERSITY OF CALIFORNIA LOS ANGELES
    Automated Integration of Biomedical Knowledge Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01HG004836-01
    Actv: R01
    IC: HG
    PI Name(Contact): RAMONI, MARCO F
    Institution: BRIGHAM AND WOMEN'S HOSPITAL
    Application of MAGNet Tools to Gene Regulatory Networks in Cancer Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01CA124380-02
    Actv: R01
    IC: CA
    PI Name(Contact): SANDER, CHRIS
    Institution: SLOAN-KETTERING INSTITUTE FOR CANCER RES
    Development and Dissemination of Robust Brain MRI Measurement Tools Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01EB006733-02
    Actv: R01
    IC: EB
    PI Name(Contact): SHEN, DINGGANG
    Institution: UNIVERSITY OF NORTH CAROLINA CHAPEL HILL
    Semantics and Services enabled Problem Solving Environment for Trypanosoma cruzi Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01HL087795-02
    Actv: R01
    IC: HL
    PI Name(Contact): SHETH, AMIT P
    Institution: WRIGHT STATE UNIVERSITY
    Biocomputation of the Links Between Muscle Morphology, Coordination and Injury Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01AR056201-03
    Actv: R01
    IC: AR
    PI Name(Contact): THELEN, DARRYL G
    Institution: UNIVERSITY OF WISCONSIN MADISON
    NA-MIC virtual colonoscopy Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 1R01CA131718-01A1
    Actv: R01
    IC: CA
    PI Name(Contact): YOSHIDA, HIROYUKI
    Institution: MASSACHUSETTS GENERAL HOSPITAL
    The Cardiac Atlas Project: Establishment of a Cardiac MRI Database. Fiscal Year: 2009
    RFA/PA Number: PAR07-249
    Grant Number: 5R01HL087773-02
    Actv: R01
    IC: HL
    PI Name(Contact): YOUNG, ALISTAIR ANDREW
    Institution: UNIVERSITY OF AUCKLAND
    Generation and Description of Neuronal Morphology and Connectivit Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 2R01NS039600-10A1
    Actv: R01
    IC: NS
    PI Name(Contact): ASCOLI, GIORGIO A
    Institution: GEORGE MASON UNIVERSITY
    Algorithmic strategies for detecting structural variation in genomes Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01HG004962-01
    Actv: R01
    IC: HG
    PI Name(Contact): BAFNA, VINEET
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    Parallel Software for Fast, Automated Determination of Virus Structures Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R56AI079095-01
    Actv: R56
    IC: AI
    PI Name(Contact): BAKER, TIMOTHY S
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    Software Integration between JSim and Systems Biology Workbench Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB008407-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): BASSINGTHWAIGHTE, JAMES B
    Institution: UNIVERSITY OF WASHINGTON
    Predicting Protein-DNA Interactions with Structural Models Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM088277-01
    Actv: R01
    IC: GM
    PI Name(Contact): BRADLEY, PHILIP
    Institution: FRED HUTCHINSON CANCER RESEARCH CENTER
    Visualization of Pelvic Floor Reflexes Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB006170-01A2
    Actv: R01
    IC: EB
    PI Name(Contact): CONSTANTINOU, CHRISTOS EURIPIDES
    Institution: PALO ALTO INSTITUTE FOR RES & EDU, INC.
    NeuroML: Standards and Tools for Multiscale Model Specification and Exchange Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01MH081905-01A1
    Actv: R01
    IC: MH
    PI Name(Contact): CROOK, SHARON MARIE
    Institution: ARIZONA STATE UNIVERSITY-TEMPE CAMPUS
    High-Throughput Computing for a Multi-Plan Framework in Radiotherapy Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01CA130814-01A2
    Actv: R01
    IC: CA
    PI Name(Contact): D'SOUZA, WARREN D
    Institution: UNIVERSITY OF MARYLAND BALTIMORE
    Electron Spin Relaxation in Model Membranes Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 2R01EB003150-27
    Actv: R01
    IC: EB
    PI Name(Contact): FREED, JACK H
    Institution: CORNELL UNIVERSITY ITHACA
    Tract-Specific Analysis of Brain White Matter Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01NS065347-01A1
    Actv: R01
    IC: NS
    PI Name(Contact): GEE, JAMES C
    Institution: UNIVERSITY OF PENNSYLVANIA
    CONNJUR: A Software Integration Platform for Biomolecular NMR Spectroscopy Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM083072-01A2
    Actv: R01
    IC: GM
    PI Name(Contact): GRYK, MICHAEL R
    Institution: UNIVERSITY OF CONNECTICUT SCH OF MED/DNT
    Cataloging the subcellular and suborganellar proteomes of sequenced genomes Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM086533-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): GUDA, CHITTIBABU
    Institution: STATE UNIVERSITY OF NEW YORK AT ALBANY
    Ontology-based Information Network to Support Vaccine Research Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01AI081062-01A1
    Actv: R01
    IC: AI
    PI Name(Contact): HE, YONGQUN
    Institution: UNIVERSITY OF MICHIGAN AT ANN ARBOR
    Conformal Geometry for Medical Imaging Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB007530-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): KAUFMAN, ARIE E
    Institution: STATE UNIVERSITY NEW YORK STONY BROOK
    Simulator for Primary HIV Replication and Evolution Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01AI083115-01A1
    Actv: R01
    IC: AI
    PI Name(Contact): LEE, HA YOUN
    Institution: UNIVERSITY OF ROCHESTER
    THE XNAT IMAGING INFORMATICS PLATFORM Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB009352-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): MARCUS, DANIEL SCOTT
    Institution: WASHINGTON UNIVERSITY
    Bioinformatics Strategies: Biodefense Vaccine Research Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 2R01AI059694-06
    Actv: R01
    IC: AI
    PI Name(Contact): MOORE, JASON H.
    Institution: DARTMOUTH COLLEGE
    Biophysical Models for Prediction and Design of Eukaryotic Chromatin Structure an Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01HG004708-01A1
    Actv: R01
    IC: HG
    PI Name(Contact): MOROZOV, ALEXANDRE V
    Institution: RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK
    Collaborative Development of Biomedical Ontologies and Terminologies Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM086587-01
    Actv: R01
    IC: GM
    PI Name(Contact): MUSEN, MARK A
    Institution: STANFORD UNIVERSITY
    An Efficient Lightweight Environment for Biomedical Computation Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01HG004909-01
    Actv: R01
    IC: HG
    PI Name(Contact): NEKRUTENKO, ANTON
    Institution: PENNSYLVANIA STATE UNIVERSITY-UNIV PARK
    NIRFAST Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01CA132750-01A1
    Actv: R01
    IC: CA
    PI Name(Contact): POGUE, BRIAN WILLIAM
    Institution: DARTMOUTH COLLEGE
    Computer Modeling of Surgical Outcomes for Nasal Airway Obstruction Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB009557-01
    Actv: R01
    IC: EB
    PI Name(Contact): RHEE, JOHN S
    Institution: MEDICAL COLLEGE OF WISCONSIN
    Functional consequences of cancer mutations Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01CA132744-01A1
    Actv: R01
    IC: CA
    PI Name(Contact): SANDER, CHRIS
    Institution: SLOAN-KETTERING INSTITUTE FOR CANCER RES
    NEW DATA ANALYSIS METHODS FOR ACTIGRAPHY IN SLEEP MEDICINE Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01HL092347-01A1
    Actv: R01
    IC: HL
    PI Name(Contact): SHANNON, WILLIAM D
    Institution: WASHINGTON UNIVERSITY
    Graph-Based Medical Image Segmentation in 3D and 4D Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 2R01EB004640-04
    Actv: R01
    IC: EB
    PI Name(Contact): SONKA, MILAN
    Institution: UNIVERSITY OF IOWA
    Influence of Peptide Structure on Dissociation Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 2R01GM051387-13
    Actv: R01
    IC: GM
    PI Name(Contact): WYSOCKI, VICKI H
    Institution: UNIVERSITY OF ARIZONA
    Computational Tools for Adaptive Radiation Therapy Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01CA133474-01A2
    Actv: R01
    IC: CA
    PI Name(Contact): XING, LEI
    Institution: STANFORD UNIVERSITY
    Genome-Transcription-Phenome-Wide Association: a new paradigm for association stu Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM087694-01
    Actv: R01
    IC: GM
    PI Name(Contact): XING, POE E
    Institution: CARNEGIE-MELLON UNIVERSITY
    Mass Informatics of Two Dimensinoal Gas Chromatography Time-of-flight Mass Spectr Fiscal Year: 2009
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM087735-01
    Actv: R01
    IC: GM
    PI Name(Contact): ZHANG, XIANG
    Institution: UNIVERSITY OF LOUISVILLE
    New Methods of Studying Aging, Health and Longevity: Combining Longitudinal Data Fiscal Year: 2009
    RFA/PA Number: PAR07-3440
    Grant Number: 1R01AG030198-01A2
    Actv: R01
    IC: AG
    PI Name(Contact): YASHIN, ANATOLIY I
    Institution: DUKE UNIVERSITY
    Development and Maintenance of the MEAD Software Suite Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01GM086243-01
    Actv: R01
    IC: GM
    PI Name(Contact): BASHFORD, DONALD E.
    Institution: ST. JUDE CHILDREN'S RESEARCH HOSPITAL
    Continued Development and Evaluation of caTIES Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01CA132672-01A1
    Actv: R01
    IC: CA
    PI Name(Contact): CROWLEY, REBECCA S
    Institution: UNIVERSITY OF PITTSBURGH AT PITTSBURGH
    Development of a comprehensive system for distant homology analysis Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01GM087218-01
    Actv: R01
    IC: GM
    PI Name(Contact): GODZIK, ADAM
    Institution: SANFORD-BURNHAM MEDICAL RESEARCH INSTIT
    Tools for Large-Scale Platform-Independent MEG Data Analysis Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01EB009048-01
    Actv: R01
    IC: EB
    PI Name(Contact): HAMALAINEN, MATTI
    Institution: MASSACHUSETTS GENERAL HOSPITAL
    Extending InterMine to yeast rat and zebrafish model organism databases Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01HG004834-01
    Actv: R01
    IC: HG
    PI Name(Contact): MICKLEM, GOS
    Institution: UNIVERSITY OF CAMBRIDGE
    DtiStudio: Resource Software for Diffusion Tensor Imaging Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01NS058299-01A2
    Actv: R01
    IC: NS
    PI Name(Contact): MORI, SUSUMU
    Institution: JOHNS HOPKINS UNIVERSITY
    Algorithms for Molecular Kinetics Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01GM084891-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): QIN, FENG
    Institution: STATE UNIVERSITY OF NEW YORK AT BUFFALO
    Continued Development and Maintenance of a Computational Morphometry Toolkit Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01EB008381-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): ROHLFING, TORSTEN
    Institution: SRI INTERNATIONAL
    Continued Development of 4-dimensional Image Warping and Registration Software Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01EB008374-01A2
    Actv: R01
    IC: EB
    PI Name(Contact): SHEN, DINGGANG
    Institution: UNIVERSITY OF NORTH CAROLINA CHAPEL HILL
    Continual Development of Protein Docking Algorithms Fiscal Year: 2009
    RFA/PA Number: PAR08-010
    Grant Number: 1R01GM084884-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): WENG, ZHIPING
    Institution: UNIV OF MASSACHUSETTS MED SCH WORCESTER
    Mechanisms of Metabolic Dysfunction in Heart Disease Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01HL094317-01
    Actv: R01
    IC: HL
    PI Name(Contact): BEARD, DANIEL A
    Institution: MEDICAL COLLEGE OF WISCONSIN
    Multiscale Network Modeling of Hemodynamically-Driven Vascular Adaptation Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01HL095508-01
    Actv: R01
    IC: HL
    PI Name(Contact): BERCELI, SCOTT A
    Institution: UNIVERSITY OF FLORIDA
    Predicting cell deformation from body level mechanical loads Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01EB009643-01
    Actv: R01
    IC: EB
    PI Name(Contact): ERDEMIR, AHMET
    Institution: CLEVELAND CLINIC LERNER COL/MED-CWRU
    Multiscale Modeling and Parallel Simulations of Blood Flow in Cerebral Malaria an Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01HL094270-01A1
    Actv: R01
    IC: HL
    PI Name(Contact): KARNIADAKIS, GEORGE
    Institution: BROWN UNIVERSITY
    Multi-Scale Modeling of the Failing Heart for Cardiac Rysynchronization Therapy Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01HL096544-01
    Actv: R01
    IC: HL
    PI Name(Contact): MCCULLOCH, ANDREW D.
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    Lymphatic Fluid Flow Modeling with Active Network Components Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01HL094269-01A1
    Actv: R01
    IC: HL
    PI Name(Contact): MOORE, JAMES E
    Institution: TEXAS ENGINEERING EXPERIMENT STATION
    Predictive experiment-based multiscale models of angiogenesis in breast cancer Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 1R01CA138264-01
    Actv: R01
    IC: CA
    PI Name(Contact): POPEL, ALEKSANDER S.
    Institution: JOHNS HOPKINS UNIVERSITY
    MSM Mapping and Modeling ErbB Receptor Membrane Topogra Fiscal Year: 2009
    RFA/PA Number: PAR08-023
    Grant Number: 2R01CA119232-04
    Actv: R01
    IC: CA
    PI Name(Contact): WILSON, BRIDGET S
    Institution: UNIVERSITY OF NEW MEXICO
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