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    • Funded Project Summary for Fiscal Year: 2008


    Project TitleProject Information
    Quantitiative model for the development of neural topographic maps Fiscal Year: 2008
    RFA/PA Number: PAR06-410
    Grant Number: 1R01EY018068-01A1
    Actv: R01
    IC: EY
    PI Name(Contact): KOULAKOV, ALEXEI
    Institution: COLD SPRING HARBOR LABORATORY
    Interplay Between Cancer and Immune Cells on Targeted Therapy Fiscal Year: 2008
    RFA/PA Number: PAR06-410
    Grant Number: 1R01CA130817-01
    Actv: R01
    IC: CA
    PI Name(Contact): LEE, PETER POON-HANG
    Institution: STANFORD UNIVERSITY
    Accelerating Biomolecular Simulations on Reconfigurable Computing Hardware Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM083946-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): AGARWAL, PRATUL K
    Institution: UT-BATTELLE, LLC-OAK RIDGE NATIONAL LAB
    Enzyme Isoselective Inhibition ? a Novel Computational Approach to Drug Design Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM081329-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): ALBECK, AMNON
    Institution: BAR-ILAN UNIVERSITY
    Algorithms and Software for Difficult Proteomics Problems Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM085718-01
    Actv: R21
    IC: GM
    PI Name(Contact): BERN, MARSHALL WAYNE
    Institution: PALO ALTO RESEARCH CENTER
    Grid Based Modeling of Electrical Propagation in Excitable Tissue Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM080698-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): BUCHANAN, JACK W
    Institution: UNIVERSITY OF TENNESSEE HEALTH SCI CTR
    Integrating Genomic Data and Biological Knowledge to Learn Context-Specific Gene Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21LM009706-01
    Actv: R21
    IC: LM
    PI Name(Contact): KIM, SEUNGCHAN
    Institution: ARIZONA STATE UNIVERSITY-TEMPE CAMPUS
    Dynamic Scoring: A novel method for quantitative modeling of guest-host associati Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM085604-01
    Actv: R21
    IC: GM
    PI Name(Contact): LILL, MARKUS A
    Institution: PURDUE UNIVERSITY WEST LAFAYETTE
    Decision Support in the Care of Preterm Newborns-Tool Development Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21HL090598-01A1
    Actv: R21
    IC: HL
    PI Name(Contact): MUELLER, MARTINA
    Institution: MEDICAL UNIVERSITY OF SOUTH CAROLINA
    Correlation Vectors in Gene Expression Profiling Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 5R21GM079259-02
    Actv: R21
    IC: GM
    PI Name(Contact): QIU, XING
    Institution: UNIVERSITY OF ROCHESTER
    Peptide Biomarker Discovery by Mass Spectrometry for Early Detection of Liver Can Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21CA130837-01A1
    Actv: R21
    IC: CA
    PI Name(Contact): RESSOM, HABTOM W
    Institution: GEORGETOWN UNIVERSITY
    Statistical Methods to Study Dynamic Transcriptional Regulatory Networks Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM084008-01
    Actv: R21
    IC: GM
    PI Name(Contact): SUN, NING
    Institution: YALE UNIVERSITY
    Computational Analysis and Modeling of Contractile Ring Assembly Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM083928-01
    Actv: R21
    IC: GM
    PI Name(Contact): VAVYLONIS, DIMITRIOS
    Institution: LEHIGH UNIVERSITY
    Lung Tumor Motion Behavior Analysis Using 4DCT Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21CA130849-01A1
    Actv: R21
    IC: CA
    PI Name(Contact): WU, HUANMEI
    Institution: INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS
    Distributed, Collaborative Intelligent Agents for Proactive Post-Marketing Drug S Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21GM082821-01A1
    Actv: R21
    IC: GM
    PI Name(Contact): YING, HAO
    Institution: WAYNE STATE UNIVERSITY
    Generation of Ethanol Response Gene Resource by Large-Scale Data Integration Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21AA017437-01A1
    Actv: R21
    IC: AA
    PI Name(Contact): ZHAO, ZHONGMING
    Institution: VIRGINIA COMMONWEALTH UNIVERSITY
    A web platform for integrative genomic analysis in aging Fiscal Year: 2008
    RFA/PA Number: PAR06-411
    Grant Number: 1R21AG031723-01
    Actv: R21
    IC: AG
    PI Name(Contact): ZHOU, XIANGHONG JASMINE
    Institution: UNIVERSITY OF SOUTHERN CALIFORNIA
    GI Video-to-3D: Gastrointestinal Tract 3D Modeling and Visualization for In-Vivo Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43RR025873-01A1
    Actv: R43
    IC: RR
    PI Name(Contact): GENG, JASON
    Institution: XIGEN, LLC
    Scalable Learning with Ensemble Techniques and Parallel Computing Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R44GM083965-01
    Actv: R44
    IC: GM
    PI Name(Contact): GONG, LIXIN
    Institution: INSIGHTFUL CORPORATION
    Advanced image processing software for membrane protein structure determination Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43GM083921-01
    Actv: R43
    IC: GM
    PI Name(Contact): HUGHES, OWEN
    Institution: EON CORPORATION
    Scalable tools for the analysis of chemical compounds using graph-based querying Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 9R44MH086121-02
    Actv: R44
    IC: MH
    PI Name(Contact): LINDSTROM, WILLIAM MAXWELL
    Institution: ACELOT, INC.
    Scalable Secure Sharable Computation Platform for Proteomics Data Analysis Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43HG004622-01
    Actv: R43
    IC: HG
    PI Name(Contact): NILSSON, ERIK J
    Institution: INSILICOS
    Visual Programming Tool for Integrated Gene/Protein Networks in Cancer Research Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 2R44CA125807-02
    Actv: R44
    IC: CA
    PI Name(Contact): SASINOWSKI, MACIEK
    Institution: INCOGEN, INC.
    Automated 4D Neuromorphometry: Detecting Change in Brain Structur Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43NS061023-01
    Actv: R43
    IC: NS
    PI Name(Contact): SMITH, MICHAEL E
    Institution: CORTECHS LABS, INC.
    Computer modeling of Biochemical Reaction Rates Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43GM083178-01
    Actv: R43
    IC: GM
    PI Name(Contact): STEWART, JAMES J
    Institution: STEWART COMPUTATIONAL CHEMISTRY
    Integrating microbial signal transduction pathways and their metabolic targets Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43GM083177-01
    Actv: R43
    IC: GM
    PI Name(Contact): ULRICH, LUKE E.
    Institution: AGILE GENOMICS, LLC
    Improving the Differential Diagnosis of Pneumonia and Congestive Heart Failure Us Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43HL091840-01
    Actv: R43
    IC: HL
    PI Name(Contact): VYSHEDSKIY, ANDREY
    Institution: STETHOGRAPHICS, INC.
    Development of a Highly Automated Microarray Data Analysis System That Allows Fiscal Year: 2008
    RFA/PA Number: PAR07-160
    Grant Number: 1R43LM009913-01A1
    Actv: R43
    IC: LM
    PI Name(Contact): ZHU, YUERONG
    Institution: BIOINFORX, INC.
    Development of a low-cost hardware accelerator for 3D image registration Fiscal Year: 2008
    RFA/PA Number: PAR07-161
    Grant Number: 1R41CA137886-01
    Actv: R41
    IC: CA
    PI Name(Contact): SHEKHAR, RAJ
    Institution: IGI TECHNOLOGIES, INC.
    Commercial Software for Modeling of G Protein-Coupled Receptors Fiscal Year: 2008
    RFA/PA Number: PAR07-161
    Grant Number: 1R43GM080726-01A1
    Actv: R43
    IC: GM
    PI Name(Contact): FARID, RAMY
    Institution: SCHRODINGER, INC.
    Reconstructing dynamic regulatory networks Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM085022-01
    Actv: R01
    IC: GM
    PI Name(Contact): BAR-JOSEPH, ZIV
    Institution: CARNEGIE-MELLON UNIVERSITY
    Identifying Microorganisms involved in Human Health and Disease Processes Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01AI078885-01A2
    Actv: R01
    IC: AI
    PI Name(Contact): BORNEMAN, JAMES
    Institution: UNIVERSITY OF CALIFORNIA RIVERSIDE
    Adaptive Personalized Information Management for Biologists Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM081293-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): COHEN, WILLIAM W
    Institution: CARNEGIE-MELLON UNIVERSITY
    Advanced Neuroimages Registration Methods: Effects of Prenatal Cocaine Exposure Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01DA022807-01A1
    Actv: R01
    IC: DA
    PI Name(Contact): GEE, JAMES C
    Institution: UNIVERSITY OF PENNSYLVANIA
    The Statistical and Computational Analysis of Flow Cytometry Data Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB008400-01
    Actv: R01
    IC: EB
    PI Name(Contact): GENTLEMAN, ROBERT C
    Institution: FRED HUTCHINSON CANCER RESEARCH CENTER
    A Validated Micro-Structural Mechanical Model of Coronary Arteries Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01HL087235-01A2
    Actv: R01
    IC: HL
    PI Name(Contact): KASSAB, GHASSAN S
    Institution: INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS
    Transcription Factor-DNA Interactions: Structural Classification and Prediction Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM085325-01
    Actv: R01
    IC: GM
    PI Name(Contact): PONOMARENKO, JULIA VLADIMIROVNA
    Institution: UNIVERSITY OF CALIFORNIA SAN DIEGO
    IMP: Software for Hybrid Determination of Macromolecular Assembly Structures Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM083960-01
    Actv: R01
    IC: GM
    PI Name(Contact): SALI, ANDREJ
    Institution: UNIVERSITY OF CALIFORNIA SAN FRANCISCO
    Preclinical predictive markers of post-approval drug safety Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM085421-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): SCHACHTER, ASHER D
    Institution: CHILDREN'S HOSPITAL BOSTON
    A Boundary Element Method for MRI/NIR Tomography and Image-guided Fluorescence Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB007966-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): SRINIVASAN, SUBHADRA
    Institution: DARTMOUTH COLLEGE
    BioGPS: Extensible Web 2.0 gene portal for structured and unstructured annotation Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM083924-01
    Actv: R01
    IC: GM
    PI Name(Contact): SU, ANDREW I
    Institution: NOVARTIS INST FOR FUNCTIONAL GENOMICS
    Analysis of mRNA Polyadenylation across Species and Tissues Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM084089-01
    Actv: R01
    IC: GM
    PI Name(Contact): TIAN, BIN
    Institution: UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL
    Statistical Methods for Integrative Analysis of Genomics and Proteomics Data Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM082802-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): WANG, PEI
    Institution: FRED HUTCHINSON CANCER RESEARCH CENTER
    FEBio - Finite Elements for Biomechanics and Biophysics Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01GM083925-01A1
    Actv: R01
    IC: GM
    PI Name(Contact): WEISS, JEFFREY A.
    Institution: UNIVERSITY OF UTAH
    An Intregated System for the Epidemiological Application of Earth Observation Tec Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01AI079411-01
    Actv: R01
    IC: AI
    PI Name(Contact): WIMBERLY, MICHAEL C
    Institution: SOUTH DAKOTA STATE UNIVERSITY
    High-content Image Analysis and Modeling for RANigenome-wide Screening Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01CA121225-01A2
    Actv: R01
    IC: CA
    PI Name(Contact): WONG, STEPHEN TC
    Institution: METHODIST HOSPITAL RESEARCH INSTITUTE
    A Computational Approach To Closing The Gap Between Tissue Structure And Function Fiscal Year: 2008
    RFA/PA Number: PAR07-344
    Grant Number: 1R01EB008016-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): YENER, BULENT
    Institution: RENSSELAER POLYTECHNIC INSTITUTE
    MrSPA: Integrated tools and development platform for magnetic resonance research Fiscal Year: 2008
    RFA/PA Number: PAR08-010
    Grant Number: 1R01EB008387-01A1
    Actv: R01
    IC: EB
    PI Name(Contact): SOHER, BRIAN J
    Institution: DUKE UNIVERSITY
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